PP_0031A59.2

Display Name: Spain/PP_0031A59.2/2025-02-04
Cristina Andres, Alejandra Gonzalez Sanchez, Ignasi Prats, Karen Garcia Comunas, Elena Dima, Maria Carmen Martin, Tomas Pumarola & Andres Anton

Sample details

Collection date
2025-02-04
Country
Spain
Admin level 1
Catalonia
GISAID Isolate ID
EPI_ISL_19771933

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-06-30 13:08agonzalezOPEN
Data use terms URL

Lineage

Lineage
B.D.E.1.1

Authors

Author affiliations
Hospital Universitari Vall d'Hebron - Vall d'Hebron Institut de Recerca

INSDC

INSDC accession
BioProject accession
BioSample accession
GCA accession

Alignment and QC metrics

Length
15445
Completeness
94.98%
# of SNPs
142
# of inserted bases
296
# of deleted bases
1
# of ambiguous bases
0
# of unknown bases
692
# of frame shifts
0
# of stop codons
0

Submission details

Submission ID
hRSV/B/Spain/CT-HUVH146923/2025
Submitting group
Date submitted
2025-07-08 12:27:45 UTC
Date released
2025-07-08 12:35:09 UTC
Earliest release date
2025-06-30

Nucleotide mutations

Mutations called relative to the OP975389.1 reference

Substitutions

  • A276G
  • G513T
  • C536T
  • G579A
  • C628T
  • A1132G
  • T1333C
  • G1385A
  • G1732A
  • T1846C
  • C2074T
  • C2198T
  • A2550G
  • T2595G
  • C2691T
  • C2707T
  • G2977A
  • C3000T
    • Deletions
    4586
    Insertions
    ins_3888:GTAGATCTTGGAGCCTACCTAGAAAAAGAAAGTATATATTATGTTACAACAAATTGGAAGCACACAGCTACACGATTTGCAATCAAACCCATGGAAGATTAACCTTTTTCCTCTACATCAATGAGTAGATTCATACAAACTTTCTAACTACATTCTTCACTTCACAATCATAATCACCAACCCTTTGTGATTCAATCAATCAAACAAAACTCATCAGGAGTTCCAGAAGCTCCTGATGAGTTTTGATTGATTGATTGAACTACAGAGGGTTGGTGATNNNNNNNNNNATTTATA, ins_15092:AT

    Amino acid mutations

    Mutations called relative to the OP975389.1 reference

    Substitutions

    F

  • F:S190N
  • F:S211N
  • F:S389P
  • F:N524S

    • G

  • G:A74V
  • G:S100G
  • G:T131A
  • G:I137T
  • G:P214S
  • G:P221L
  • G:I252T
  • G:K256N
  • G:I268T
  • G:S275P
  • G:Y285H

    • L

  • L:K570R
  • L:N590S
  • L:R1759K
  • L:T1987I

    • M2-2

  • M2-2:I2T
  • M2-2:S24G
  • M2-2:M27T
  • M2-2:D35N
  • M2-2:C49F

    • N

  • N:V97I

    • NS1

  • NS1:K74E

    • P

  • P:D225N

    • SH

  • SH:I49M
    • Deletions
    None
    Insertions
    ins_M:249:AIKPMED*PFSSTSMSRFIQTF*LHSSLHNHNHQPFVIQSIKQNSSGVPEAPDEF*LID*TTEGW*XXXXFIVDLGAYLEKESIYYVTTNWKHTATRF

    Report an issue with this sequence or metadata

    Create GitHub issue