PP_003130S.2

Display Name: Spain/PP_003130S.2/2025-01-22
Cristina Andres, Alejandra Gonzalez Sanchez, Ignasi Prats, Karen Garcia Comunas, Elena Dima, Maria Carmen Martin, Tomas Pumarola & Andres Anton

Sample details

Collection date
2025-01-22
Country
Spain
Admin level 1
Catalonia
GISAID Isolate ID
EPI_ISL_19739802

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-06-30 13:08agonzalezOPEN
Data use terms URL

Lineage

Lineage
B.D.E.1

Authors

Author affiliations
Hospital Universitari Vall d'Hebron - Vall d'Hebron Institut de Recerca

INSDC

INSDC accession
BioProject accession
BioSample accession
GCA accession

Alignment and QC metrics

Length
15200
Completeness
99.83%
# of SNPs
137
# of inserted bases
4
# of deleted bases
1
# of ambiguous bases
0
# of unknown bases
1
# of frame shifts
0
# of stop codons
0

Submission details

Submission ID
hRSV/B/Spain/CT-HUGTiP316851/2025
Submitting group
Date submitted
2025-07-08 12:27:45 UTC
Date released
2025-07-08 12:35:09 UTC
Earliest release date
2025-06-30

Nucleotide mutations

Mutations called relative to the OP975389.1 reference

Substitutions

  • G27A
  • A67G
  • T224C
  • G513C
  • G579A
  • A696G
  • A769G
  • C998A
  • T1041G
  • C1330T
  • G1385A
  • G1732A
  • C2074T
  • G2161A
  • C2198T
  • T2328C
  • T2346C
  • T2355C
    • Deletions
    4586
    Insertions
    ins_15092:ATAT

    Amino acid mutations

    Mutations called relative to the OP975389.1 reference

    Substitutions

    F

  • F:E2G
  • F:I17V
  • F:S190N
  • F:S211N
  • F:S389P

    • G

  • G:A74V
  • G:S100G
  • G:T131A
  • G:I137T
  • G:P214S
  • G:P221L
  • G:S243N
  • G:I252T
  • G:K256N
  • G:I268T
  • G:S275P
  • G:Y285H
  • G:P289S
  • G:T292A

    • L

  • L:S202L
  • L:K570R
  • L:H1599Y
  • L:A1694D
  • L:R1759K
  • L:T1987I

    • M2-2

  • M2-2:I2T
  • M2-2:M27T
  • M2-2:D35N
  • M2-2:C49F

    • N

  • N:V97I

    • NS1

  • NS1:N4S

    • NS2

  • NS2:K38R

    • P

  • P:T60I

    • SH

  • SH:M60I
    • Deletions
    None
    Insertions
    None

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