PP_0030PGA.2

Display Name: Spain/PP_0030PGA.2/2025-01-12
Cristina Andres, Alejandra Gonzalez Sanchez, Ignasi Prats, Karen Garcia Comunas, Elena Dima, Maria Carmen Martin, Tomas Pumarola & Andres Anton

Sample details

Collection date
2025-01-12
Country
Spain
Admin level 1
Catalonia
GISAID Isolate ID
EPI_ISL_19739814

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-06-30 12:59agonzalezOPEN
Data use terms URL

Lineage

Lineage
A.D.3

Authors

Author affiliations
Hospital Universitari Vall d'Hebron - Vall d'Hebron Institut de Recerca

INSDC

INSDC accession
BioProject accession
BioSample accession
GCA accession

Alignment and QC metrics

Length
15200
Completeness
99.82%
# of SNPs
219
# of inserted bases
2
# of deleted bases
0
# of ambiguous bases
0
# of unknown bases
0
# of frame shifts
0
# of stop codons
0

Submission details

Submission ID
hRSV/A/Spain/CT-HUVH510430/2025
Submitting group
Date submitted
2025-07-08 12:21:40 UTC
Date released
2025-07-08 12:23:46 UTC
Earliest release date
2025-06-30

Nucleotide mutations

Mutations called relative to the PP109421.1 reference

Substitutions

  • T59C
  • G62A
  • T66A
  • A67G
  • C90T
  • C183T
  • G587T
  • G972A
  • G1000A
  • C1012T
  • G1034A
  • C1047T
  • G1050A
  • G1077A
  • T1359C
  • T1413A
  • T1422C
  • A1533G
    • Deletions
    None
    Insertions
    ins_3154:A, ins_7586:A

    Amino acid mutations

    Mutations called relative to the PP109421.1 reference

    Substitutions

    F

  • F:T12I
  • F:T19I
  • F:M115T
  • F:S276N

    • G

  • G:H90Y
  • G:L101F
  • G:T113I
  • G:P120L
  • G:P126L
  • G:V131D
  • G:I134K
  • G:N178G
  • G:T210I
  • G:G224E
  • G:V225A
  • G:P230T
  • G:S243I
  • G:N251Y
  • G:H258Q
  • G:K262E
  • G:I265L
  • G:H266L

    • L

  • L:G7R
  • L:T104N
  • L:P171L
  • L:A173S
  • L:R256K
  • L:Y598H
  • L:L835M
  • L:K1204N
  • L:L1438Q
  • L:F1620Y
  • L:N1723S
  • L:E1725G
  • L:G1731D
  • L:Y1732C
  • L:V2129I

    • M2-1

  • M2-1:R20K

    • M2-2

  • M2-2:Y24C
  • M2-2:S44N
  • M2-2:T77A

    • N

  • N:V352A

    • P

  • P:L55P
  • P:T92I
  • P:I106L
    • Deletions
    None
    Insertions
    None

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