PP_0030PDG.2

Display Name: Spain/PP_0030PDG.2/2025-01-06
Cristina Andres, Alejandra Gonzalez Sanchez, Ignasi Prats, Karen Garcia Comunas, Elena Dima, Maria Carmen Martin, Tomas Pumarola & Andres Anton

Sample details

Collection date
2025-01-06
Country
Spain
Admin level 1
Catalonia
GISAID Isolate ID
EPI_ISL_19692864

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-06-30 12:59agonzalezOPEN
Data use terms URL

Lineage

Lineage
A.D.5.1

Authors

Author affiliations
Hospital Universitari Vall d'Hebron - Vall d'Hebron Institut de Recerca

INSDC

INSDC accession
BioProject accession
BioSample accession
GCA accession

Alignment and QC metrics

Length
15197
Completeness
99.82%
# of SNPs
257
# of inserted bases
5
# of deleted bases
6
# of ambiguous bases
0
# of unknown bases
0
# of frame shifts
0
# of stop codons
0

Submission details

Submission ID
hRSV/A/Spain/CT-HUVH505656/2025
Submitting group
Date submitted
2025-07-08 12:21:40 UTC
Date released
2025-07-08 12:23:46 UTC
Earliest release date
2025-06-30

Nucleotide mutations

Mutations called relative to the PP109421.1 reference

Substitutions

  • T66A
  • A67G
  • C90T
  • C183T
  • A327T
  • A465G
  • T697C
  • T841C
  • A940C
  • A1009G
  • C1012T
  • A1021G
  • T1028C
  • G1050A
  • A1051C
  • T1070A
  • A1073G
  • G1079A
    • Deletions
    4592, 7516-7518, 15114, 15115
    Insertions
    ins_4104:AAAAC

    Amino acid mutations

    Mutations called relative to the PP109421.1 reference

    Substitutions

    F

  • F:A10T
  • F:L119H
  • F:T122A
  • F:F477Y

    • G

  • G:A57V
  • G:P71L
  • G:H90Y
  • G:L101F
  • G:T118I
  • G:Q127L
  • G:I134K
  • G:P206Q
  • G:K209R
  • G:G224E
  • G:S243I
  • G:L248I
  • G:K253Q
  • G:K262E
  • G:I265L
  • G:P276L
  • G:D284G
  • G:V303A

    • L

  • L:S141P
  • L:P171L
  • L:R256K
  • L:Y598H
  • L:L1438Q
  • L:N1665D
  • L:N1723G
  • L:G1731D
  • L:V1803A
  • L:V1943D

    • M

  • M:M73L

    • M2-1

  • M2-1:S176P
  • M2-1:H187N

    • M2-2

  • M2-2:Y24C
  • M2-2:S44N

    • N

  • N:Y216H
  • N:V352A

    • P

  • P:L55P
  • P:I62T
    • Deletions
    None
    Insertions
    None

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