PP_0030PAN.2

Display Name: Spain/PP_0030PAN.2/2024-12-30
Maria Pinana, Cristina Andres, Alejandra Gonzalez Sanchez, Ignasi Prats, Karen Garcia Comunas, Maria Piquer, Elena Dima, Maria Carmen Martin, Tomas Pumarola & Andres Anton

Sample details

Collection date
2024-12-30
Country
Spain
Admin level 1
Catalonia
GISAID Isolate ID
EPI_ISL_19692861

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-06-30 12:59agonzalezOPEN
Data use terms URL

Lineage

Lineage
A.D.3.11

Authors

Author affiliations
Hospital Universitari Vall d'Hebron - Vall d'Hebron Institut de Recerca

INSDC

INSDC accession
BioProject accession
BioSample accession
GCA accession

Alignment and QC metrics

Length
11048
Completeness
72.56%
# of SNPs
178
# of inserted bases
1
# of deleted bases
1
# of ambiguous bases
0
# of unknown bases
0
# of frame shifts
0
# of stop codons
0

Submission details

Submission ID
hRSV/A/Spain/CT-HUVH499733/2024
Submitting group
Date submitted
2025-07-08 12:21:40 UTC
Date released
2025-07-08 12:23:46 UTC
Earliest release date
2025-06-30

Nucleotide mutations

Mutations called relative to the PP109421.1 reference

Substitutions

  • T59C
  • T66A
  • C75A
  • C90T
  • C183T
  • G192A
  • G587T
  • C589T
  • G925A
  • C983A
  • C1012T
  • G1034A
  • G1050A
  • G1077A
  • T1359C
  • A1361G
  • T1413A
  • T1422C
    • Deletions
    4592
    Insertions
    ins_3154:A

    Amino acid mutations

    Mutations called relative to the PP109421.1 reference

    Substitutions

    F

  • F:T12I
  • F:A23T
  • F:K123R

    • G

  • G:A57T
  • G:P71L
  • G:H90Y
  • G:L101F
  • G:T113I
  • G:V131D
  • G:I134K
  • G:N178G
  • G:G224E
  • G:V225A
  • G:S243I
  • G:T245A
  • G:H258Q
  • G:K262E
  • G:I265L
  • G:H266L
  • G:S277P
  • G:D284G

    • L

  • L:N37D
  • L:P171L
  • L:R256K
  • L:Y598H
  • L:L835M

    • M2-1

  • M2-1:S176P

    • M2-2

  • M2-2:Y24C
  • M2-2:S44N
  • M2-2:D62G
  • M2-2:T77A

    • N

  • N:K84R
  • N:V352A

    • P

  • P:L55P
  • P:T92M
    • Deletions
    None
    Insertions
    None

    Report an issue with this sequence or metadata

    Create GitHub issue