PP_0030G0F.2

Display Name: Spain/PP_0030G0F.2/2025-01-28
Cristina Andres, Alejandra Gonzalez Sanchez, Ignasi Prats, Karen Garcia Comunas, Elena Dima, Maria Carmen Martin, Tomas Pumarola & Andres Anton

Sample details

Collection date
2025-01-28
Country
Spain
Admin level 1
Catalonia
GISAID Isolate ID
EPI_ISL_19739803

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-06-30 12:59agonzalezOPEN
Data use terms URL

Lineage

Lineage
A.D.3.2

Authors

Author affiliations
Hospital Universitari Vall d'Hebron - Vall d'Hebron Institut de Recerca

INSDC

INSDC accession
BioProject accession
BioSample accession
GCA accession

Alignment and QC metrics

Length
15067
Completeness
98.31%
# of SNPs
220
# of inserted bases
101
# of deleted bases
2
# of ambiguous bases
0
# of unknown bases
0
# of frame shifts
1
# of stop codons
0
Frame shifts
G:268-322(nt:5453-5617)

Submission details

Submission ID
hRSV/A/Spain/CT-HUVC083614/2025
Submitting group
Date submitted
2025-07-08 12:21:40 UTC
Date released
2025-07-08 12:23:46 UTC
Earliest release date
2025-06-30

Nucleotide mutations

Mutations called relative to the PP109421.1 reference

Substitutions

  • A280G
  • G587T
  • G590A
  • A682G
  • C769A
  • G934A
  • C1012T
  • G1034A
  • G1050A
  • T1063G
  • G1077A
  • G1191A
  • T1359C
  • T1413A
  • T1422C
  • A1518G
  • C1788T
  • C1806T
    • Deletions
    4174, 4592
    Insertions
    ins_3154:A, ins_5452:NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

    Amino acid mutations

    Mutations called relative to the PP109421.1 reference

    Substitutions

    F

  • F:T12I
  • F:S105N
  • F:S276N

    • G

  • G:S37T
  • G:P71L
  • G:H90Y
  • G:L101S
  • G:T113I
  • G:V131D
  • G:I134K
  • G:R151H
  • G:N178G
  • G:G224E
  • G:P230T
  • G:T239A
  • G:S243T
  • G:L247Q
  • G:H258Q

    • L

  • L:P171L
  • L:R256K
  • L:Y598H
  • L:L835M
  • L:L1438Q
  • L:I1653V
  • L:N1723S
  • L:E1725G
  • L:G1731D

    • M

  • M:I159T

    • M2-1

  • M2-1:S176P

    • M2-2

  • M2-2:Y24C
  • M2-2:S44N
  • M2-2:T77A

    • N

  • N:V352A

    • NS1

  • NS1:I71V

    • P

  • P:L55P
  • P:S60P
  • P:T92I
    • Deletions
    None
    Insertions
    ins_G:261:EETLLSXXXXXXXXXXXXXXXXXXXXXXXXXXX

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