PP_002YP60.1

Restricted-Use sequence

This sequence is only available under the Restricted Use Terms. This prohibits publications that use this sequence as focal data during the restricted-use period, except with the consent of the sequence submitters.
Display Name: Argentina/PP_002YP60.1/2018-08-07
Dolores Acuna, Mercedes S. Nabaes Jodar, Stephanie Goya, Alicia S. Mistchenko, Angela Gentile & Mariana Viegas

Sample details

Collection date
2018-08-07
Country
Argentina

Data use terms

Data use terms
RESTRICTED

Data use terms history

ChangedUserData use terms
2025-06-09 16:31doloacuRESTRICTED until 2026-06-09
Data use terms URL

Lineage

Lineage
B.D.4.1.1

Host

Host name - scientific
Human

Sequencing

Sequencing instrument
NextSeq550
Sequencing protocol
Nextera XT; Illumina

Alignment and QC metrics

Length
15166
Completeness
79.82%
# of SNPs
72
# of inserted bases
4
# of deleted bases
1
# of ambiguous bases
0
# of unknown bases
3013
# of frame shifts
0
# of stop codons
0

Submission details

Submission ID
HRSV/B/Argentina/PAIS-HNRG/430/2018-08-07
Submitting group
Date submitted
2025-06-09 16:31:44 UTC
Date released
2025-06-09 16:32:29 UTC
Earliest release date
2025-06-09

Nucleotide mutations

Mutations called relative to the OP975389.1 reference

Substitutions

  • G513T
  • G579A
  • C583T
  • G639A
  • C975T
  • A1132G
  • A1336T
  • G1385A
  • G1651A
  • T1846C
  • C2198T
  • C2445T
  • T2781C
  • C3058A
  • C3067T
  • C3082T
  • C3146T
  • C3180T
    • Deletions
    4586
    Insertions
    ins_3204:AGAA

    Amino acid mutations

    Mutations called relative to the OP975389.1 reference

    Substitutions

    F

  • F:F12L
  • F:S276N
  • F:E463D

    • G

  • G:A74V
  • G:T131A
  • G:I137T
  • G:T237I
  • G:I310T

    • L

  • L:T1757A
  • L:V1775M
  • L:T1987I

    • M2-1

  • M2-1:P123S

    • N

  • N:V97I

    • NS2

  • NS2:R19K
    • Deletions
    None
    Insertions
    None

    Report an issue with this sequence or metadata

    Create GitHub issue