PP_002YM1C.1

Argentina/PP_002YM1C.1/2022-09-08
Dolores Acuna, Mercedes S. Nabaes Jodar, Stephanie Goya, Alicia S. Mistchenko, Angela Gentile & Mariana Viegas

Sample details

Collection date
2022-09-08
Sampling location
Argentina

Data use terms

Data use terms
OPEN
Data use terms URL

Lineage

Lineage
A.D.3.3

INSDC

INSDC accession
BioProject accession
BioSample accession
GCA accession

Host

Host

Sequencing

Sequencing instrument
NextSeq 550
Sequencing protocol
Nextera XT; Illumina

Submission details

Submission ID
HRSV/A/Argentina/PAIS-HNRG/466/2022-09-08
Submitting group
Date submitted
2025-06-09 15:39:21 UTC
Date released
2025-06-09 15:40:49 UTC
Earliest release date
2025-06-09

Alignment and QC

Length
15129 (99.4%)
# of SNPs
184
# of inserted bases
4
# of deleted bases
2

Nucleotide mutations

Mutations called relative to the PP109421.1 reference

Substitutions
  • T59C
  • T66A
  • A67G
  • G74A
  • C90T
  • C183T
  • A354G
  • G587T
  • C1012T
  • G1034A
  • G1050A
  • A1076G
  • G1077A
  • T1137C
  • C1182T
  • T1218C
  • T1326C
  • T1359C
Deletions
4592, 7555
Insertions
ins_2298:A, ins_3154:A, ins_15115:TT

Amino acid substitutions

Substitutions called relative to the PP109421.1 reference

Substitutions

F

  • F:V127I

G

  • G:P71L
  • G:H90Y
  • G:L101F
  • G:I134K
  • G:L142S
  • G:G224V
  • G:S243I
  • G:K262E
  • G:I265L
  • G:D284G
  • G:Y304H
  • G:T319I
  • G:T320A

L

  • L:Q52H
  • L:N142D
  • L:P171L
  • L:R256K
  • L:Y598H
  • L:L835M
  • L:I1114V
  • L:L1438Q
  • L:N1723S
  • L:E1725G
  • L:G1731D

M2-1

  • M2-1:S176P

M2-2

  • M2-2:Y24C
  • M2-2:S44N
  • M2-2:H45Y
  • M2-2:T77A

N

  • N:V352A

NS1

  • NS1:G2D

P

  • P:L55P
  • P:T92M
Deletions
N/A
Insertions
N/A

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