PP_002YKXM.1

Restricted-Use sequence

This sequence is only available under the Restricted Use Terms. This prohibits publications that use this sequence as focal data during the restricted-use period, except with the consent of the sequence submitters.
Display Name: Argentina/PP_002YKXM.1/2023-07-25
Dolores Acuna, Gretel Paula Wenk, Luciana Montoto Piazza, Vivian Bokser, Lourdes Dominguez Figueredo, Emilce Haleblian, Laura Mino, Eugenia Sevilla, Alejandra Svartz, Victoria Nadalich, Andres Angeletti, Andres Cordero, Matias Irazoqui & Mariana Viegas

Sample details

Collection date
2023-07-25
Country
Argentina

Data use terms

Data use terms
RESTRICTED

Data use terms history

ChangedUserData use terms
2025-06-09 15:39doloacuRESTRICTED until 2026-06-09
Data use terms URL

Lineage

Lineage
A.D.1.5

Host

Host name - scientific
Human

Sequencing

Sequencing instrument
MinIon
Sequencing protocol
Rapid Barcoding Kit; Oxford Nanopore

Alignment and QC metrics

Length
15129
Completeness
99.37%
# of SNPs
197
# of inserted bases
0
# of deleted bases
0
# of ambiguous bases
0
# of unknown bases
0
# of frame shifts
0
# of stop codons
0

Submission details

Submission ID
HRSV/A/Argentina/PAIS-ELZ/69/2023-07-25
Submitting group
Date submitted
2025-06-09 15:39:21 UTC
Date released
2025-06-09 15:40:49 UTC
Earliest release date
2025-06-09

Nucleotide mutations

Mutations called relative to the PP109421.1 reference

Substitutions

  • T66A
  • A67G
  • C90T
  • C183T
  • G198A
  • A321G
  • A351G
  • C528T
  • G551A
  • C622T
  • G664A
  • T697C
  • A748G
  • T928C
  • G1000A
  • C1012T
  • T1048C
  • G1050A
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the PP109421.1 reference

    Substitutions

    F

  • F:V127I

    • G

  • G:P71L
  • G:H90Y
  • G:L101F
  • G:I134K
  • G:L142S
  • G:G224V
  • G:S243I
  • G:K262E
  • G:I265L
  • G:D284G
  • G:Y304H
  • G:E308D
  • G:T319I
  • G:T320A

    • L

  • L:N143D
  • L:P171L
  • L:T179S
  • L:R256K
  • L:Y598H
  • L:L1438Q
  • L:I1653V
  • L:K1661N
  • L:N1723S
  • L:E1725G
  • L:G1731D

    • M

  • M:M43I

    • M2-1

  • M2-1:N174S
  • M2-1:S176P
  • M2-1:T180A
  • M2-1:S182G

    • M2-2

  • M2-2:Y24C
  • M2-2:S44N

    • N

  • N:V352A

    • P

  • P:L55P
    • Deletions
    None
    Insertions
    None

    Report an issue with this sequence or metadata

    Create GitHub issue