PP_002YJ1F.1

Argentina/PP_002YJ1F.1/2023-05-30
Dolores Acuna, Liliana F. Cannigia, Paula Della Lata, Eugenia Ibanez, Marta Costa, Victoria Nadalich, Andres Angeletti, Andres Cordero, Matias Irazoqui & Mariana Viegas

Sample details

Collection date
2023-05-30
Sampling location
Argentina

Data use terms

Data use terms
OPEN
Data use terms URL

Lineage

Lineage
A.D.1.5

INSDC

INSDC accession
BioProject accession
BioSample accession
GCA accession

Host

Host

Sequencing

Sequencing instrument
MinION
Sequencing protocol
Rapid Barcoding Kit; Oxford Nanopore

Submission details

Submission ID
HRSV/A/Argentina/PAIS-ALM/23/2023-05-30
Submitting group
Date submitted
2025-06-09 15:39:21 UTC
Date released
2025-06-09 15:40:49 UTC
Earliest release date
2025-06-09

Alignment and QC

Length
13483 (59.9%)
# of SNPs
112
# of unknown bases
4358

Nucleotide mutations

Mutations called relative to the PP109421.1 reference

Substitutions
  • T66A
  • A67G
  • C90T
  • G198A
  • A321G
  • G348A
  • C1012T
  • A1090G
  • T1359C
  • G1662A
  • C1788T
  • C1806T
  • T1882C
  • T2165C
  • A2392G
  • T2481C
  • A2695G
  • G2782A
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the PP109421.1 reference

Substitutions

F

  • F:V127I

G

  • G:P71L
  • G:H90Y
  • G:L101F
  • G:I134K
  • G:L142S
  • G:G224V
  • G:S243I
  • G:K262E
  • G:I265L
  • G:D284G
  • G:Y304H
  • G:T319I
  • G:T320A

L

  • L:N143D

M

  • M:M43I

M2-1

  • M2-1:N174S
  • M2-1:S176P
  • M2-1:T180A
  • M2-1:S182G

M2-2

  • M2-2:Y24C
  • M2-2:S44N

N

  • N:V352A

NS1

  • NS1:M93I

P

  • P:L55P
Deletions
N/A
Insertions
N/A

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