PP_002YHTX.1

Restricted-Use sequence

This sequence is only available under the Restricted Use Terms. This prohibits publications that use this sequence as focal data during the restricted-use period, except with the consent of the sequence submitters.
Display Name: Argentina/PP_002YHTX.1/2023-05-18
Dolores Acuna, Liliana F. Cannigia, Paula Della Lata, Eugenia Ibanez, Marta Costa, Victoria Nadalich, Andres Angeletti, Andres Cordero, Matias Irazoqui & Mariana Viegas

Sample details

Collection date
2023-05-18
Country
Argentina

Data use terms

Data use terms
RESTRICTED

Data use terms history

ChangedUserData use terms
2025-06-09 15:39doloacuRESTRICTED until 2026-06-09
Data use terms URL

Lineage

Lineage
A.D.5.3

Host

Host name - scientific
Human

Sequencing

Sequencing instrument
MinIon
Sequencing protocol
Rapid Barcoding Kit; Oxford Nanopore

Alignment and QC metrics

Length
15098
Completeness
98.47%
# of SNPs
201
# of inserted bases
0
# of deleted bases
0
# of ambiguous bases
0
# of unknown bases
106
# of frame shifts
0
# of stop codons
0

Submission details

Submission ID
HRSV/A/Argentina/PAIS-ALM/13/2023-05-18
Submitting group
Date submitted
2025-06-09 15:39:21 UTC
Date released
2025-06-09 15:40:49 UTC
Earliest release date
2025-06-09

Nucleotide mutations

Mutations called relative to the PP109421.1 reference

Substitutions

  • T66A
  • A67G
  • C90T
  • C183T
  • A201G
  • T246C
  • T463C
  • G664A
  • T886C
  • A940C
  • A1009G
  • C1012T
  • G1050A
  • A1051G
  • C1173T
  • T1218C
  • T1242C
  • T1320C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the PP109421.1 reference

    Substitutions

    F

  • F:L15F
  • F:T122A

    • G

  • G:P71L
  • G:A79V
  • G:H90Y
  • G:L101F
  • G:I134K
  • G:P206Q
  • G:G224E
  • G:S243I
  • G:L248I
  • G:I265L
  • G:P276Q
  • G:V303A
  • G:Y304H
  • G:L310P
  • G:L314P
  • G:T320A

    • L

  • L:P171L
  • L:T179A
  • L:L315H
  • L:V335I
  • L:Y598H
  • L:L1438Q
  • L:N1723G
  • L:G1731D
  • L:V1943D
  • L:K2040R

    • M2-2

  • M2-2:Y24C
  • M2-2:S44N
  • M2-2:D62E

    • N

  • N:V352A

    • P

  • P:L55P
    • Deletions
    None
    Insertions
    None

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