REVOKED

PP_00110KS.2

Display Name: Senegal/PP_00110KS.2/2022-08
O. Sene

Sample details

Collection date
2022-08
Country
Senegal
Isolate name
ARD401186

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-01-22 09:24insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Institut Pasteur, Dakar, Virology

INSDC

INSDC accession S
NCBI release date
2025-01-18

Host

Host taxon ID
Host name - scientific
Rhipicephalus sulcatus

Alignment and QC metrics S

Length S
1579
Completeness S
94.38%
# of SNPs S
127
# of inserted bases S
1
# of deleted bases S
0
# of ambiguous bases S
0
# of unknown bases S
0
# of frame shifts S
0
# of stop codons S
0

Submission details

Submission ID
PP894738.1.S
Submitting group
Date submitted
2025-05-28 12:35:18 UTC
Date released
2025-05-28 12:35:51 UTC
Earliest release date
2025-01-18

Lineage

Segment S Lineage
III

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • S:G47C
  • S:A50G
  • S:G54A
  • S:G67A
  • S:G99A
  • S:G100A
  • S:C178A
  • S:T181C
  • S:G189A
  • S:T199C
  • S:G202A
  • S:G229A
  • S:C235T
  • S:A247G
  • S:G271A
  • S:C295T
  • S:A298G
  • S:A322G
    • Deletions
    None
    Insertions
    ins_S:1577:A

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    NP

  • NP:R15K
  • NP:R45K
  • NP:K91R
  • NP:T124A
  • NP:G125N
  • NP:L179Q
  • NP:H195R
  • NP:I246V
  • NP:S301G
  • NP:K428R
  • NP:V436I
    • Deletions
    None
    Insertions
    None

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