PP_000RGVA.1

Display Name: Guinea/PP_000RGVA.1/2021-04-08
Naidenova, E. V.; Krasnov, Y. M.; Zakharov, K. S.; Agafonov, D. A.; Senichkina, A. M.; Guseva, N. P.; Katyshev, S. D.; Gurkin, G. A.; Kartashov, M. Y.; Shipovalov, A. V.; Kabanov, A. S.; Boumbaly, S.; Diallo, M. G.; Bah, M. B.

Submission details

Submission ID
PQ361719.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-10-03 02:19:03 UTC
Date released
2024-10-03 02:19:14 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2024-10-03 02:19insdc_ingest_userOPEN
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data

Authors

Author affiliations
Russian Antiplague Research Institute 'Microbe', Microbiology

Alignment states and QC metrics S

Completeness S
97.43%
Length S
1653
Total ambiguous nucs S
0
Total deleted nucs S
18
Total frame shifts S
0
Total inserted nucs S
19
Total SNPs S
233
Total unknown nucs S
23

Sample details

Collection subdivision level 1
Boke
Collection country
Guinea
Collection date
2021-04-08
Isolate name
5435

Host

Host name scientific
Amblyomma variegatum
Host taxon id
34610

INSDC

INSDC accession S
PQ361719.1
NCBI release date
2024-10-02

Nucleotide mutations

Substitutions

S

  • S:G20T
  • S:T46A
  • S:T49C
  • S:A50T
  • S:G54A
  • S:T79C
  • S:A81G
  • S:G99A
  • S:G100A
  • S:C115T
  • S:A121G
  • S:G134A
  • S:C139T
  • S:C142T
  • S:T157C
  • S:C166T
  • S:G171A
  • S:T175A
    • Deletions
    S:1542-1547, S:1573, S:1574, S:1610-1619
    Insertions
    ins_S:1563:TATG, ins_S:1566:AT, ins_S:1579:ATC, ins_S:1629:CTATCTTTCA

    Amino acid mutations

    Substitutions

    NP

  • NP:N9S
  • NP:R15K
  • NP:V27M
  • NP:S39N
  • NP:R45K
  • NP:A100S
  • NP:S109N
  • NP:T111A
  • NP:T124A
  • NP:G125N
  • NP:P192L
  • NP:H195R
  • NP:D199E
  • NP:I246V
  • NP:R270K
  • NP:S301G
  • NP:A307P
  • NP:Y311F
    • Deletions
    None
    Insertions
    None