PP_000R8VJ.1

Display Name: Turkey/PP_000R8VJ.1/2021-01-01
Kalaycioglu, A. T.; Oguzoglu, T. C.; Ari, O.; Durmaz, R.; Engin, A.; Bakir, M.

Submission details

Submission ID
ON623080.1.M
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-08-27 12:10:45 UTC
Date released
2024-08-27 12:15:34 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2024-08-27 12:11insdc_ingest_userOPEN
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data

Authors

Author affiliations
Karadeniz Technical University, Faculty of Pharmacy Department of Pharmaceutical Microbiology

Alignment states and QC metrics M

Completeness M
99.96%
Length M
5362
Total ambiguous nucs M
0
Total deleted nucs M
30
Total frame shifts M
0
Total inserted nucs M
28
Total SNPs M
1022
Total unknown nucs M
0

Sample details

Collection subdivision level 2
Asia
Collection country
Turkey
Collection date
2021-01-01
Isolate name
TR-SIVAS-C2M-2021

Host

Host name scientific
Homo sapiens
Host taxon id
9606

INSDC

INSDC accession M
ON623080.1
NCBI release date
2023-02-20

Nucleotide mutations

Substitutions

M

  • M:T40A
  • M:G50A
  • M:A51G
  • M:T67C
  • M:T68C
  • M:A69G
  • M:T71G
  • M:G76C
  • M:A80G
  • M:T83C
  • M:G84A
  • M:T86C
  • M:C92T
  • M:T100C
  • M:T102C
  • M:C103T
  • M:A108G
  • M:A112G
    • Deletions
    M:165-167, M:327-329, M:593-595, M:5172, M:5173, M:5180, M:5181, M:5187-5191, M:5232-5234, M:5246-5250, M:5277-5280
    Insertions
    ins_M:158:CAG, ins_M:5202:CTT, ins_M:599:ATA, ins_M:5238:AGAGACTG, ins_M:5286:TAAG, ins_M:5194:CGTCTAG

    Amino acid mutations

    Substitutions

    GPC

  • GPC:I3T
  • GPC:S4L
  • GPC:M6V
  • GPC:Y7C
  • GPC:A8F
  • GPC:C11Y
  • GPC:C15L
  • GPC:L17R
  • GPC:E19G
  • GPC:T20A
  • GPC:S23Q
  • GPC:H24S
  • GPC:E26A
  • GPC:R28E
  • GPC:K31R
  • GPC:D33N
  • GPC:M35T
  • GPC:T37A
    • Deletions
    GPC:90
    Insertions
    None